Index

A

alogsumexp() (in module WHAM.lib.numeric)

B

betaF_l (WHAM.binned.Calc1D attribute) betaF_stat() (WHAM.binless.CalcDD method) bin_2D_betaF_profile() (WHAM.binless.Calc1D method) bin_betaF_profile() (WHAM.binless.Calc1D method) (WHAM.binless.CalcDD method) bin_second_betaF_profile() (WHAM.binless.Calc1D method) binless_KLD_reweighted_win_betaF() (in module WHAM.statistics) binless_KLD_reweighted_win_betaF_DD() (in module WHAM.statistics) binless_reweight_phi_ensemble() (in module WHAM.statistics)

binless_reweighted_win_betaF() (in module WHAM.statistics) binless_reweighted_win_betaF_DD() (in module WHAM.statistics) binned_KLD_reweighted_win_betaF() (in module WHAM.statistics) binned_KLD_reweighted_win_betaF_DD() (in module WHAM.statistics) binned_reweight_phi_ensemble() (in module WHAM.statistics) binned_reweighted_win_betaF() (in module WHAM.statistics) binned_reweighted_win_betaF_DD() (in module WHAM.statistics) bootstrap_independent_sample() (in module WHAM.lib.timeseries) bootstrap_window_samples() (in module WHAM.lib.timeseries)

C

Calc1D (class in WHAM.binless) (class in WHAM.binned) CalcBase (class in WHAM.binless) CalcDD (class in WHAM.binless) (class in WHAM.binned) check_data() (WHAM.binless.CalcBase method)

check_weights() (WHAM.binless.CalcBase method) clogsumexp() (in module WHAM.lib.numeric) compute_betaF_profile() (WHAM.binless.Calc1D method) (WHAM.binless.CalcDD method) (WHAM.binned.Calc1D method) (WHAM.binned.CalcDD method) compute_point_weights() (WHAM.binless.CalcBase method)

D

D_KL() (in module WHAM.statistics)

D_KL_DD() (in module WHAM.statistics)

G

g_i (WHAM.binless.Calc1D attribute) (WHAM.binless.CalcBase attribute) (WHAM.binless.CalcDD attribute) (WHAM.binned.Calc1D attribute) (WHAM.binned.CalcDD attribute)

G_l (WHAM.binless.Calc1D attribute) (WHAM.binless.CalcBase attribute) (WHAM.binless.CalcDD attribute) (WHAM.binned.CalcDD attribute) grad_NLL() (WHAM.binless.CalcBase method)

H

harmonic() (in module WHAM.lib.potentials)

harmonic_DD() (in module WHAM.lib.potentials)

L

linear() (in module WHAM.lib.potentials)

linear_DD() (in module WHAM.lib.potentials)

M

minimize_NLL_solver() (WHAM.binless.CalcBase method) (WHAM.binned.Calc1D method) module WHAM.binless WHAM.binned WHAM.lib.numeric WHAM.lib.potentials WHAM.lib.timeseries WHAM.statistics

N

NLL() (WHAM.binless.CalcBase method) (WHAM.binned.Calc1D method)

R

reweight() (WHAM.binless.CalcBase method)

S

self_consistent_solver() (WHAM.binless.CalcBase method) (WHAM.binned.Calc1D method)

statisticalInefficiency() (in module WHAM.lib.timeseries)

W

WHAM.binless module WHAM.binned module WHAM.lib.numeric module WHAM.lib.potentials module

WHAM.lib.timeseries module WHAM.statistics module win_betaF() (in module WHAM.statistics) win_betaF_DD() (in module WHAM.statistics)

X

x_l (WHAM.binless.Calc1D attribute) (WHAM.binless.CalcBase attribute) (WHAM.binless.CalcDD attribute) (WHAM.binned.Calc1D attribute)

X_l (WHAM.binned.CalcDD attribute), [1]